FastdRNA: a workflow for analysis of ONT direct RNA seq dataset
FastdRNA is a pipeline written in snakemake to handle ONT direct RNA seq database.
The analysis includes :
- dRNAmain: a module for basecalling. mapping and transcriptome count.
- dRNAtail: a module for RNA poly(A) length estimate.
- dRNAmodif: a module for RNA modification detection.
- dRNAas: a module for alternative splicing analysis.
> ##### TIP
>
> If pipeline broken by some error, just type command again after you fix it.
> snakemake will automatically continue from the broken point
>